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Rename mantis to shrimpy #147

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wants to merge 5 commits into from
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Rename mantis to shrimpy #147

wants to merge 5 commits into from

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talonchandler
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@talonchandler talonchandler commented Jul 5, 2024

This PR is important but not urgent.

For this PR I:

  • Did a find and replace of mantis with shrimpy
  • Manually reinstated "mantis microscope" throughout the docs. (mantis is the microscope, shrimpy is the analysis package)
  • Manually fixed URLs that used shrimPy (and the new czbiohub-sf)
  • Updated the CLI so that it accepts both shrimpy and shrimPy (similar to recOrder/recorder).
  • Updated paths (absolute hpc paths, and relative paths on mantis computer...the acquisition computer will almost certainly need a fresh installation of shrimPy to update paths and CLI calls.)

@talonchandler talonchandler marked this pull request as ready for review July 5, 2024 20:07
@talonchandler
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Closing for now. We'll rename on both sides (shrimpy and biahub) after the split with this TODO list.

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